microbeПроблемы особо опасных инфекцийProblems of Particularly Dangerous Infections0370-10692658-719XRussian Research Anti-Plague Institute “Microbe”10.21055/0370-1069-2009-1(99)-35-41microbe-1000Research ArticleМИКРОБИОЛОГИЯMICROBIOLOGYАнализ эффективности некоторых методов построения филогенетических деревьев, используемых при оценке эволюционного родства микроорганизмовAnalysis of the Efficiency of Some Methods of Construction of Phylogenetic Trees Used in Evaluation of Microorganisms Evolutionary RelationsВолковЮ. П.VolkovYu. P.
410005, Saratov, Universitetskaya St., 46
microbe@san.ruЕрошенкоГ. А.EroshenkoG. A.
410005, Saratov, Universitetskaya St., 46
microbe@san.ruФГУЗ «Российский научно-исследовательский противочумный институт «Микроб», СаратовРоссияRussian Anti-Plague Research Institute “Microbe", SaratovRussian Federation20092002200901(99)3541Copyright © Волков Ю.П., Ерошенко Г.А., 20092009Волков Ю.П., Ерошенко Г.А.Volkov Y.P., Eroshenko G.A.Данная работа распространяется под лицензией Creative Commons Attribution 4.0.This work is licensed under a Creative Commons Attribution 4.0 License.https://journal.microbe.ru/jour/article/view/1000филогенетические деревьядистанционно-матричные и дискретные методы построения дендрограмммолекулярные часы эволюцииphylogenetic treesdistance matrices and discrete methods of dendrograms constructionevolution molecular clockРФФИ, гранты № 07-0400100, 08-04-00731 и 08-04-12082 офи.ReferencesГасфилд Дж. Строки, деревья и последовательности в алгоритмах: Информатика и вычислительная биология. СПб.: Невский диалект, БХВ-Петербург; 2003. 654 с.Гасфилд Дж. Строки, деревья и последовательности в алгоритмах: Информатика и вычислительная биология. СПб.: Невский диалект, БХВ-Петербург; 2003. 654 с.Baxevanis A.D., Francis-Ouellette B.F. Bioinformatics. A practical guide to the analysis of genes and proteins. N.Y.: John-Willey; 2001. 470 p.Baxevanis A.D., Francis-Ouellette B.F. Bioinformatics. A practical guide to the analysis of genes and proteins. N.Y.: John-Willey; 2001. 470 p.Chuang Peng. Distance based methods in phylogenetic tree construction. 2007. P. 1-11. Available from:http://biochem218. stanford.edu/Projects%20Winter%202007/Peng1.pdfChuang Peng. Distance based methods in phylogenetic tree construction. 2007. P. 1-11. Available from:http://biochem218. stanford.edu/Projects%20Winter%202007/Peng1.pdfDeSalle R., Giribet G., Wheeler W. Techniques in molecular systematics and evolution. Birkhauser; 2002. 420 p.DeSalle R., Giribet G., Wheeler W. Techniques in molecular systematics and evolution. Birkhauser; 2002. 420 p.Felsenstein J. PHYLIP -Phylogeny Inference Package (version 3.2). Cladistics. 1989; 5:164-6. Available from:http://evolution.genetics.washington.edu/phylip.html.Felsenstein J. PHYLIP -Phylogeny Inference Package (version 3.2). Cladistics. 1989; 5:164-6. Available from:http://evolution.genetics.washington.edu/phylip.html.Foley P.L., Humphries C.J., Kitching I.L. Cladistics: A practical course in systematics. Oxford: Oxford Univ. Press; 1992. 507 p.Foley P.L., Humphries C.J., Kitching I.L. Cladistics: A practical course in systematics. Oxford: Oxford Univ. Press; 1992. 507 p.Friedman A., Costner C. Tutorials in mathematical biosciences IV. Springer; 2007. 210 p.Friedman A., Costner C. Tutorials in mathematical biosciences IV. Springer; 2007. 210 p.Gascuel O. Mathematics of evolution and phylogeny. Oxford: Clarendon Press; 2004. 33 p.Gascuel O. Mathematics of evolution and phylogeny. Oxford: Clarendon Press; 2004. 33 p.Kitching I.J., Forey P.L., Humphries C.J., Williams D.M. Cladistics. The theory and practice of parsimony analysis. Oxford University Press; 1998. 228p.Kitching I.J., Forey P.L., Humphries C.J., Williams D.M. Cladistics. The theory and practice of parsimony analysis. Oxford University Press; 1998. 228p.Mount D.W. Bioinformatics. Sequence and genome analysis. Cold Spring Harbor Laboratory Press; 2003. 550 p.Mount D.W. Bioinformatics. Sequence and genome analysis. Cold Spring Harbor Laboratory Press; 2003. 550 p.Page R. Parallel phylogenies: Reconstructing the history of host-parasite assemblages. Cladistics. 1994; 10: 155-73.Page R. Parallel phylogenies: Reconstructing the history of host-parasite assemblages. Cladistics. 1994; 10: 155-73.Semple C., Steel M. Phylogenetics. Oxford University Press; 2003. 256 p.Semple C., Steel M. Phylogenetics. Oxford University Press; 2003. 256 p.Skelton P., Smith A. Cladistics, a practical primer on CD-ROM. Cambridge University Press; 2002. 79 p.Skelton P., Smith A. Cladistics, a practical primer on CD-ROM. Cambridge University Press; 2002. 79 p.Xiong Jin. Essential bioinformatics. Cambridge University Press; 2006. 361 p.Xiong Jin. Essential bioinformatics. Cambridge University Press; 2006. 361 p.
The authors declare that there are no conflicts of interest present.