Preview

Problems of Particularly Dangerous Infections

Advanced search

Analysis of the Efficiency of Some Methods of Construction of Phylogenetic Trees Used in Evaluation of Microorganisms Evolutionary Relations

https://doi.org/10.21055/0370-1069-2009-1(99)-35-41

Abstract

The review presents description of some methods of phylogenetic trees construction used in evaluation of different organisms evolutionary relations. Described are advantages and disadvantages of different groups of methods applicable for dendrograms construction.

About the Authors

Yu. P. Volkov
Russian Anti-Plague Research Institute “Microbe", Saratov
Russian Federation
410005,  Saratov,  Universitetskaya  St.,  46


G. A. Eroshenko
Russian Anti-Plague Research Institute “Microbe", Saratov
Russian Federation
410005,  Saratov,  Universitetskaya  St.,  46


References

1. Гасфилд Дж. Строки, деревья и последовательности в алгоритмах: Информатика и вычислительная биология. СПб.: Невский диалект, БХВ-Петербург; 2003. 654 с.

2. Baxevanis A.D., Francis-Ouellette B.F. Bioinformatics. A practical guide to the analysis of genes and proteins. N.Y.: John-Willey; 2001. 470 p.

3. Chuang Peng. Distance based methods in phylogenetic tree construction. 2007. P. 1-11. Available from:http://biochem218. stanford.edu/Projects%20Winter%202007/Peng1.pdf

4. DeSalle R., Giribet G., Wheeler W. Techniques in molecular systematics and evolution. Birkhauser; 2002. 420 p.

5. Felsenstein J. PHYLIP -Phylogeny Inference Package (version 3.2). Cladistics. 1989; 5:164-6. Available from:http://evolution.genetics.washington.edu/phylip.html.

6. Foley P.L., Humphries C.J., Kitching I.L. Cladistics: A practical course in systematics. Oxford: Oxford Univ. Press; 1992. 507 p.

7. Friedman A., Costner C. Tutorials in mathematical biosciences IV. Springer; 2007. 210 p.

8. Gascuel O. Mathematics of evolution and phylogeny. Oxford: Clarendon Press; 2004. 33 p.

9. Kitching I.J., Forey P.L., Humphries C.J., Williams D.M. Cladistics. The theory and practice of parsimony analysis. Oxford University Press; 1998. 228p.

10. Mount D.W. Bioinformatics. Sequence and genome analysis. Cold Spring Harbor Laboratory Press; 2003. 550 p.

11. Page R. Parallel phylogenies: Reconstructing the history of host-parasite assemblages. Cladistics. 1994; 10: 155-73.

12. Semple C., Steel M. Phylogenetics. Oxford University Press; 2003. 256 p.

13. Skelton P., Smith A. Cladistics, a practical primer on CD-ROM. Cambridge University Press; 2002. 79 p.

14. Xiong Jin. Essential bioinformatics. Cambridge University Press; 2006. 361 p.


Review

For citations:


Volkov Yu.P., Eroshenko G.A. Analysis of the Efficiency of Some Methods of Construction of Phylogenetic Trees Used in Evaluation of Microorganisms Evolutionary Relations. Problems of Particularly Dangerous Infections. 2009;(1(99)):35-41. (In Russ.) https://doi.org/10.21055/0370-1069-2009-1(99)-35-41

Views: 663


Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 License.


ISSN 0370-1069 (Print)
ISSN 2658-719X (Online)