Setting-up of the Database on the Nucleotide Sequences of the Genomes of the Strains of Bacterial and Viral Infections Agents of the I–II Pathogenicity Groups
https://doi.org/10.21055/0370-1069-2013-1-70-73
Abstract
Set-up is database containing characteristics of variable tandem repeats, oligo-nucleotide primers and probes of the genomes of the strains bacterial and viral infections agents of the I-II pathogenicity groups. It allows for accumulation of information on genome regions. Using the incorporated VBA one can rapidly analyze the data and carry out substantiated calculation of gene-diagnostic preparations based on various PCR frameworks.
About the Authors
Yu. I. Yashechkin
Russian Research Anti-Plague Institute “Microbe”
Russian Federation
Russian Federation
E. V. Naydenova
Russian Research Anti-Plague Institute “Microbe”
Russian Federation
Russian Federation
T. V. Bugorkova
Russian Research Anti-Plague Institute “Microbe”
Russian Federation
Russian Federation
S. A. Shcherbakova
Russian Research Anti-Plague Institute “Microbe”
Russian Federation
Russian Federation
References
1. Krasovskaya T.Yu., Sharova I.N., Shcherbakova S.A., Yashechkin Yu.I., Khutoretskaya N.V., Larichev V.F., Butenko A.M., Kulichenko A.N. [Development and implementation of the test-system for laboratory diagnostics of West-Nile fever using PCR]. Zdor. Nasel. Sreda Obit. 2007; 6(171): 42–6.
2. Naidenova E.V., Sharova I.N., Scherbakova S.A., Yashechkin Yu.I., Khutoretskaya N.V., Larichev V.F., Sarkisyan K.A., Vorobyova M.S., Butenko A.M., Kulichenko A.N., L’vov D.K., Kutyrev V.V. [A test system to reveal RNA of the Congo-Crimean hemorrhagic fever virus using RT-PCR procedure]. Probl. Osobo Opasn. Infek. 2006; (92):54–6.
3. Naidenova E.V., Yashechkin Yu.I., Scherbakova S.A. [A panel for I-IV type Dengue virus RNA detection using reverse transcription and PCR]. Natsional. Prior. Rossii. 2011; 2(5):53.
4. Norton Yu.A., Andersen V. [Design of Applications on the base of Original Version of Access 97 Software]. Translated from the English. SPb.; 2000. 656 p.
5. Popov Yu.A., Eroshenko G.A., Bulgakova E.G., Smirnova N.I. [Development of complex genotyping algorithm and methods of evaluation of the genetic diversity of plague and cholera agent natural strains]. Probl. Osobo Opasn. Infek. 2009; (102):5–11.
6. Chang C.H., Chang Y.C., Underwood A., Chiou C.S., Kao C.Y. VNTRDB: a bacterial variable number tandem repeat locus database. Nucl. Acids Res. 2007; 35:416–21.
7. Visual Basic 6.0. Translated from the English. SPb.; 1998. 992 p.
Review
For citations:
Yashechkin Yu.I., Naydenova E.V., Bugorkova T.V., Shcherbakova S.A. Setting-up of the Database on the Nucleotide Sequences of the Genomes of the Strains of Bacterial and Viral Infections Agents of the I–II Pathogenicity Groups. Problems of Particularly Dangerous Infections. 2013;(1):70-73. (In Russ.) https://doi.org/10.21055/0370-1069-2013-1-70-73
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